(2016)
Martinez, J., Zagrovic, B. (2016). A code within a code: how codons influence mRNA stability. EMBO J.
Temmel, H., Müller, C., Sauert, M., Vesper, O., Reiss, A., Popow, J., Martinez, J., Moll, I. (2016). The RNA ligase RtcB reverses MazF-induced ribosome heterogeneity in Escherichia coli. Nucleic Acids Res.

(2015)
Weitzer, S., Hanada, T., Penninger, JM., Martinez, J. (2015). CLP1 as a novel player in linking tRNA splicing to neurodegenerative disorders. Wiley Interdiscip Rev RNA. 6(1):47-63

(2014)
Jurkin, J., Henkel, T., Nielsen, AF., Minnich, M., Popow, J., Kaufmann, T., Heindl, K., Hoffmann, T., Busslinger, M., Martinez, J. (2014). The mammalian tRNA ligase complex mediates splicing of XBP1 mRNA and controls antibody secretion in plasma cells. EMBO J. 33(24):2922-36
Karaca, E., Weitzer, S., Pehlivan, D., Shiraishi, H., Gogakos, T., Hanada, T., Jhangiani, SN., Wiszniewski, W., Withers, M., Campbell, IM., Erdin, S., Isikay, S., Franco, LM., Gonzaga-Jauregui, C., Gambin, T., Gelowani, V., Hunter, JV., Yesil, G., Koparir, E., Yilmaz, S., Brown, M., Briskin, D., Hafner, M., Morozov, P., Farazi, TA., Bernreuther, C., Glatzel, M., Trattnig, S., Friske, J., Kronnerwetter, C., Bainbridge, MN., Gezdirici, A., Seven, M., Muzny, DM., Boerwinkle, E., Ozen, M., Clausen, T., Tuschl, T., Yuksel, A., Hess, A., Gibbs, RA., Martinez, J., Penninger, JM., Lupski, JR. (2014). Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function. Cell. 157(3):636-50
Popow, J., Jurkin, J., Schleiffer, A., Martinez, J. (2014). Analysis of orthologous groups reveals archease and DDX1 as tRNA splicing factors. Nature. 511(7507):104-7

(2013)
Gebeshuber, CA., Kornauth, C., Dong, L., Sierig, R., Seibler, J., Reiss, M., Tauber, S., Bilban, M., Wang, S., Kain, R., Böhmig, GA., Moeller, MJ., Gröne, HJ., Englert, C., Martinez, J., Kerjaschki, D. (2013). Focal segmental glomerulosclerosis is induced by microRNA-193a and its downregulation of WT1. Nat Med. 19(4):481-7
Gebeshuber, CA., Martinez, J. (2013). miR-100 suppresses IGF2 and inhibits breast tumorigenesis by interfering with proliferation and survival signaling. Oncogene. 32(27):3306-10
Hanada, T., Weitzer, S., Mair, B., Bernreuther, C., Wainger, BJ., Ichida, J., Hanada, R., Orthofer, M., Cronin, SJ., Komnenovic, V., Minis, A., Sato, F., Mimata, H., Yoshimura, A., Tamir, I., Rainer, J., Kofler, R., Yaron, A., Eggan, KC., Woolf, CJ., Glatzel, M., Herbst, R., Martinez, J., Penninger, JM. (2013). CLP1 links tRNA metabolism to progressive motor-neuron loss. Nature. 495(7442):474-80
Mair, B., Popow, J., Mechtler, K., Weitzer, S., Martinez, J. (2013). Intron excision from precursor tRNA molecules in mammalian cells requires ATP hydrolysis and phosphorylation of tRNA-splicing endonuclease components. Biochem Soc Trans. 41(4):831-7

(2012)
Popow, J., Schleiffer, A., Martinez, J. (2012). Diversity and roles of (t)RNA ligases. Cell Mol Life Sci. 69(16):2657-70

(2011)
Popow, J., Englert, M., Weitzer, S., Schleiffer, A., Mierzwa, B., Mechtler, K., Trowitzsch, S., Will, CL., Lührmann, R., Söll, D., Martinez, J. (2011). HSPC117 is the essential subunit of a human tRNA splicing ligase complex. Science. 331(6018):760-4

(2010)
Braglia, P., Heindl, K., Schleiffer, A., Martinez, J., Proudfoot, NJ. (2010). Role of the RNA/DNA kinase Grc3 in transcription termination by RNA polymerase I. EMBO Rep. 11(10):758-64
Heindl, K., Martinez, J. (2010). Nol9 is a novel polynucleotide 5'-kinase involved in ribosomal RNA processing. EMBO J. 29(24):4161-71

(2009)
Gebeshuber, CA., Zatloukal, K., Martinez, J. (2009). miR-29a suppresses tristetraprolin, which is a regulator of epithelial polarity and metastasis. EMBO Rep. 10(4):400-5
Karayel, E., Bürckstümmer, T., Bilban, M., Dürnberger, G., Weitzer, S., Martinez, J., Superti-Furga, G. (2009). The TLR-independent DNA recognition pathway in murine macrophages: Ligand features and molecular signature. Eur J Immunol. 39(7):1929-36
Nielsen, AF., Gloggnitzer, J., Martinez, J. (2009). MicroRNAs cross the line: the battle for mRNA stability enters the coding sequence. Mol Cell. 35(2):139-40
Nielsen, AF., Gloggnitzer, J., Martinez, J. (2009). Ars2 and the Cap-Binding Complex Team up for Silencing. Cell. 138(2):224-6
Siegel, G., Obernosterer, G., Fiore, R., Oehmen, M., Bicker, S., Christensen, M., Khudayberdiev, S., Leuschner, PF., Busch, CJ., Kane, C., Hübel, K., Dekker, F., Hedberg, C., Rengarajan, B., Drepper, C., Waldmann, H., Kauppinen, S., Greenberg, ME., Draguhn, A., Rehmsmeier, M., Martinez, J., Schratt, GM. (2009). A functional screen implicates microRNA-138-dependent regulation of the depalmitoylation enzyme APT1 in dendritic spine morphogenesis. Nat Cell Biol. 11(6):705-16

(2008)
Gebeshuber, C., Salvá Giró, A., Martinez, J. (2008). MicroRNAs and their impact on tumor initiation and progression. In: Human Epithelial Tumor Cell Plasticity: Implications for Cancer Progression and Metastasis. Ed. Paul J. Higgins. p:103
Martinez, J., Neugebauer, KM. (2008). El Sur también existe: processing RNA in the Argentine Patagonia. Meetings on 'Cell Biology, Signaling and Alternative Splicing' and 'Gene Expression and RNA Processing'. EMBO Rep. 9(6):516-20
Obernosterer, G., Tafer, H., Martinez, J. (2008). Target site effects in the RNA interference and microRNA pathways. Biochem Soc Trans. 36(Pt 6):1216-9
Tafer, H., Ameres, SL., Obernosterer, G., Gebeshuber, CA., Schroeder, R., Martinez, J., Hofacker, IL. (2008). The impact of target site accessibility on the design of effective siRNAs. Nat Biotechnol. 26(5):578-83

(2007)
Ameres, SL., Martinez, J., Schroeder, R. (2007). Molecular basis for target RNA recognition and cleavage by human RISC. Cell. 130(1):101-12
Leuschner, PJ., Martinez, J. (2007). In vitro analysis of microRNA processing using recombinant Dicer and cytoplasmic extracts of HeLa cells. Methods. 43(2):105-9
Martinez, J., Busslinger, M. (2007). Life beyond cleavage: the case of Ago2 and hematopoiesis. Genes Dev. 21(16):1983-8
Nielsen, AF., Leuschner, PJ., Martinez, J. (2007). Not miR-ly a splicing factor: hnRNP A1 succumbs to microRNA temptation. Nat Struct Mol Biol. 14(7):572-3
Obernosterer, G., Martinez, J., Alenius, M. (2007). Locked nucleic acid-based in situ detection of microRNAs in mouse tissue sections. Nat Protoc. 2(6):1508-14
Obernosterer, G., Meister, G., Poy, MN., Kuras, A. (2007). The impact of small RNAs. Microsymposium on small RNAs. EMBO Rep. 8(1):23-7
Weitzer, S., Martinez, J. (2007). The human RNA kinase hClp1 is active on 3' transfer RNA exons and short interfering RNAs. Nature. 447(7141):222-6
Weitzer, S., Martinez, J. (2007). hClp1: a novel kinase revitalizes RNA metabolism. Cell Cycle. 6(17):2133-7

(2006)
Leuschner, PJ., Ameres, SL., Kueng, S., Martinez, J. (2006). Cleavage of the siRNA passenger strand during RISC assembly in human cells. EMBO Rep. 7(3):314-20
Obernosterer, G., Leuschner, PJ., Alenius, M., Martinez, J. (2006). Post-transcriptional regulation of microRNA expression. RNA. 12(7):1161-7

(2005)
Leuschner, PJ., Obernosterer, G., Martinez, J. (2005). MicroRNAs: Loquacious speaks out. Curr Biol. 15(15):R603-5

(2004)
Martinez, J., Tuschl, T. (2004). RISC is a 5' phosphomonoester-producing RNA endonuclease. Genes Dev. 18(9):975-80