Game Changer - Next Generation Sequencing and its Impact on Food Microbiology
Advances in next-generation sequencing technologies (NGS) are revolutionizing the field of food microbiology. Microbial whole genome sequencing (WGS) can provide identification, characterization, and subtyping of pathogens for epidemiological investigations at a level of precision previously not pos...
Saved in:
Superior document: | Frontiers Research Topics |
---|---|
: | |
Year of Publication: | 2018 |
Language: | English |
Series: | Frontiers Research Topics
|
Physical Description: | 1 electronic resource (302 p.) |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
id |
993548068204498 |
---|---|
ctrlnum |
(CKB)4920000000094187 (oapen)https://directory.doabooks.org/handle/20.500.12854/48269 (EXLCZ)994920000000094187 |
collection |
bib_alma |
record_format |
marc |
spelling |
Sandra Torriani auth Game Changer - Next Generation Sequencing and its Impact on Food Microbiology Frontiers Media SA 2018 1 electronic resource (302 p.) text txt rdacontent computer c rdamedia online resource cr rdacarrier Frontiers Research Topics Advances in next-generation sequencing technologies (NGS) are revolutionizing the field of food microbiology. Microbial whole genome sequencing (WGS) can provide identification, characterization, and subtyping of pathogens for epidemiological investigations at a level of precision previously not possible. This allows for connections and source attribution to be inferred between related isolates that may be overlooked by traditional techniques. The archiving and global sharing of genome sequences allow for retrospective analysis of virulence genes, antimicrobial resistance markers, mobile genetic elements and other novel genes. The advent of high-throughput 16S rRNA amplicon sequencing, in combination with the advantages offered by massively parallel second-generation sequencing for metagenomics, enable intensive studies on the microbiomes of food products and the impact of foods on the human microbiome. These studies may one day lead to the development of reliable culture-independent methods for food monitoring and surveillance. Similarly, RNA-seq has provided insights into the transcriptomes and hence the behaviour of bacterial pathogens in food, food processing environments, and in interaction with the host at a resolution previously not achieved through the use of microarrays and/or RT-PCR. The vast un-tapped potential applications of NGS along with its rapidly declining costs, give this technology the ability to contribute significantly to consumer protection, global trade facilitation, and increased food safety and security. Despite the rapid advances, challenges remain. How will NGS data be incorporated into our existing global food safety infrastructure? How will massive NGS data be stored and shared globally? What bioinformatics solutions will be used to analyse and optimise these large data sets? This Research Topic discusses recent advances in the field of food microbiology made possible through the use of NGS. English Salmonella Norovirus Foodborne Listeria Food Safety Food Microbiology Next Generation Sequencing Whole Genome Sequencing Microbiome Vibrio 2-88945-463-0 Sabah Bidawid auth Jennifer Ronholm auth |
language |
English |
format |
eBook |
author |
Sandra Torriani |
spellingShingle |
Sandra Torriani Game Changer - Next Generation Sequencing and its Impact on Food Microbiology Frontiers Research Topics |
author_facet |
Sandra Torriani Sabah Bidawid Jennifer Ronholm |
author_variant |
s t st |
author2 |
Sabah Bidawid Jennifer Ronholm |
author2_variant |
s b sb j r jr |
author_sort |
Sandra Torriani |
title |
Game Changer - Next Generation Sequencing and its Impact on Food Microbiology |
title_full |
Game Changer - Next Generation Sequencing and its Impact on Food Microbiology |
title_fullStr |
Game Changer - Next Generation Sequencing and its Impact on Food Microbiology |
title_full_unstemmed |
Game Changer - Next Generation Sequencing and its Impact on Food Microbiology |
title_auth |
Game Changer - Next Generation Sequencing and its Impact on Food Microbiology |
title_new |
Game Changer - Next Generation Sequencing and its Impact on Food Microbiology |
title_sort |
game changer - next generation sequencing and its impact on food microbiology |
series |
Frontiers Research Topics |
series2 |
Frontiers Research Topics |
publisher |
Frontiers Media SA |
publishDate |
2018 |
physical |
1 electronic resource (302 p.) |
isbn |
2-88945-463-0 |
illustrated |
Not Illustrated |
work_keys_str_mv |
AT sandratorriani gamechangernextgenerationsequencinganditsimpactonfoodmicrobiology AT sabahbidawid gamechangernextgenerationsequencinganditsimpactonfoodmicrobiology AT jenniferronholm gamechangernextgenerationsequencinganditsimpactonfoodmicrobiology |
status_str |
n |
ids_txt_mv |
(CKB)4920000000094187 (oapen)https://directory.doabooks.org/handle/20.500.12854/48269 (EXLCZ)994920000000094187 |
carrierType_str_mv |
cr |
hierarchy_parent_title |
Frontiers Research Topics |
is_hierarchy_title |
Game Changer - Next Generation Sequencing and its Impact on Food Microbiology |
container_title |
Frontiers Research Topics |
author2_original_writing_str_mv |
noLinkedField noLinkedField |
_version_ |
1796651924678770688 |
fullrecord |
<?xml version="1.0" encoding="UTF-8"?><collection xmlns="http://www.loc.gov/MARC21/slim"><record><leader>03141nam-a2200409z--4500</leader><controlfield tag="001">993548068204498</controlfield><controlfield tag="005">20231214132835.0</controlfield><controlfield tag="006">m o d </controlfield><controlfield tag="007">cr|mn|---annan</controlfield><controlfield tag="008">202102s2018 xx |||||o ||| 0|eng d</controlfield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(CKB)4920000000094187</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(oapen)https://directory.doabooks.org/handle/20.500.12854/48269</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(EXLCZ)994920000000094187</subfield></datafield><datafield tag="041" ind1="0" ind2=" "><subfield code="a">eng</subfield></datafield><datafield tag="100" ind1="1" ind2=" "><subfield code="a">Sandra Torriani</subfield><subfield code="4">auth</subfield></datafield><datafield tag="245" ind1="1" ind2="0"><subfield code="a">Game Changer - Next Generation Sequencing and its Impact on Food Microbiology</subfield></datafield><datafield tag="260" ind1=" " ind2=" "><subfield code="b">Frontiers Media SA</subfield><subfield code="c">2018</subfield></datafield><datafield tag="300" ind1=" " ind2=" "><subfield code="a">1 electronic resource (302 p.)</subfield></datafield><datafield tag="336" ind1=" " ind2=" "><subfield code="a">text</subfield><subfield code="b">txt</subfield><subfield code="2">rdacontent</subfield></datafield><datafield tag="337" ind1=" " ind2=" "><subfield code="a">computer</subfield><subfield code="b">c</subfield><subfield code="2">rdamedia</subfield></datafield><datafield tag="338" ind1=" " ind2=" "><subfield code="a">online resource</subfield><subfield code="b">cr</subfield><subfield code="2">rdacarrier</subfield></datafield><datafield tag="490" ind1="1" ind2=" "><subfield code="a">Frontiers Research Topics</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">Advances in next-generation sequencing technologies (NGS) are revolutionizing the field of food microbiology. Microbial whole genome sequencing (WGS) can provide identification, characterization, and subtyping of pathogens for epidemiological investigations at a level of precision previously not possible. This allows for connections and source attribution to be inferred between related isolates that may be overlooked by traditional techniques. The archiving and global sharing of genome sequences allow for retrospective analysis of virulence genes, antimicrobial resistance markers, mobile genetic elements and other novel genes. The advent of high-throughput 16S rRNA amplicon sequencing, in combination with the advantages offered by massively parallel second-generation sequencing for metagenomics, enable intensive studies on the microbiomes of food products and the impact of foods on the human microbiome. These studies may one day lead to the development of reliable culture-independent methods for food monitoring and surveillance. Similarly, RNA-seq has provided insights into the transcriptomes and hence the behaviour of bacterial pathogens in food, food processing environments, and in interaction with the host at a resolution previously not achieved through the use of microarrays and/or RT-PCR. The vast un-tapped potential applications of NGS along with its rapidly declining costs, give this technology the ability to contribute significantly to consumer protection, global trade facilitation, and increased food safety and security. Despite the rapid advances, challenges remain. How will NGS data be incorporated into our existing global food safety infrastructure? How will massive NGS data be stored and shared globally? What bioinformatics solutions will be used to analyse and optimise these large data sets? This Research Topic discusses recent advances in the field of food microbiology made possible through the use of NGS.</subfield></datafield><datafield tag="546" ind1=" " ind2=" "><subfield code="a">English</subfield></datafield><datafield tag="653" ind1=" " ind2=" "><subfield code="a">Salmonella</subfield></datafield><datafield tag="653" ind1=" " ind2=" "><subfield code="a">Norovirus</subfield></datafield><datafield tag="653" ind1=" " ind2=" "><subfield code="a">Foodborne</subfield></datafield><datafield tag="653" ind1=" " ind2=" "><subfield code="a">Listeria</subfield></datafield><datafield tag="653" ind1=" " ind2=" "><subfield code="a">Food Safety</subfield></datafield><datafield tag="653" ind1=" " ind2=" "><subfield code="a">Food Microbiology</subfield></datafield><datafield tag="653" ind1=" " ind2=" "><subfield code="a">Next Generation Sequencing</subfield></datafield><datafield tag="653" ind1=" " ind2=" "><subfield code="a">Whole Genome Sequencing</subfield></datafield><datafield tag="653" ind1=" " ind2=" "><subfield code="a">Microbiome</subfield></datafield><datafield tag="653" ind1=" " ind2=" "><subfield code="a">Vibrio</subfield></datafield><datafield tag="776" ind1=" " ind2=" "><subfield code="z">2-88945-463-0</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Sabah Bidawid</subfield><subfield code="4">auth</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Jennifer Ronholm</subfield><subfield code="4">auth</subfield></datafield><datafield tag="906" ind1=" " ind2=" "><subfield code="a">BOOK</subfield></datafield><datafield tag="ADM" ind1=" " ind2=" "><subfield code="b">2023-12-15 05:33:18 Europe/Vienna</subfield><subfield code="f">system</subfield><subfield code="c">marc21</subfield><subfield code="a">2019-11-10 04:18:40 Europe/Vienna</subfield><subfield code="g">false</subfield></datafield><datafield tag="AVE" ind1=" " ind2=" "><subfield code="i">DOAB Directory of Open Access Books</subfield><subfield code="P">DOAB Directory of Open Access Books</subfield><subfield code="x">https://eu02.alma.exlibrisgroup.com/view/uresolver/43ACC_OEAW/openurl?u.ignore_date_coverage=true&portfolio_pid=5338722980004498&Force_direct=true</subfield><subfield code="Z">5338722980004498</subfield><subfield code="b">Available</subfield><subfield code="8">5338722980004498</subfield></datafield></record></collection> |