Species Tree Inference : : A Guide to Methods and Applications / / ed. by Laura Kubatko, L. Lacey Knowles.
An up-to-date reference book on phylogenetic methods and applications for evolutionary biologistsThe increasingly widespread availability of genomic data is transforming how biologists estimate evolutionary relationships among organisms and broadening the range of questions that researchers can test...
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Superior document: | Title is part of eBook package: De Gruyter EBOOK PACKAGE COMPLETE 2023 English |
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Place / Publishing House: | Princeton, NJ : : Princeton University Press, , [2023] ©2023 |
Year of Publication: | 2023 |
Language: | English |
Online Access: | |
Physical Description: | 1 online resource (352 p.) :; 101 b/w figures. 6 tables. |
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245 | 0 | 0 | |a Species Tree Inference : |b A Guide to Methods and Applications / |c ed. by Laura Kubatko, L. Lacey Knowles. |
264 | 1 | |a Princeton, NJ : |b Princeton University Press, |c [2023] | |
264 | 4 | |c ©2023 | |
300 | |a 1 online resource (352 p.) : |b 101 b/w figures. 6 tables. | ||
336 | |a text |b txt |2 rdacontent | ||
337 | |a computer |b c |2 rdamedia | ||
338 | |a online resource |b cr |2 rdacarrier | ||
347 | |a text file |b PDF |2 rda | ||
505 | 0 | 0 | |t Frontmatter -- |t Short Contents -- |t Preface -- |t Acknowledgments -- |t Contributors -- |t CHAPTER 1 Introduction to Species Tree Inference -- |t PART I Analytical and Methodological Developments -- |t Introduction -- |t CHAPTER 2 Large-Scale Species Tree Estimation -- |t CHAPTER 3 Species Tree Estimation Using ASTRAL: Practical Considerations -- |t CHAPTER 4 Species Tree Estimation Using Site Pattern Frequencies -- |t CHAPTER 5 Practical Aspects of Phylogenetic Network Analysis Using PhyloNet -- |t CHAPTER 6 Network Thinking: Novel Inference Tools and Scalability Challenges -- |t PART II Empirical Inference -- |t Introduction -- |t CHAPTER 7 Phylogenomic Conflict in Plants -- |t CHAPTER 8 Hybridization in Iochroma -- |t CHAPTER 9 Hybridization and Polyploidy in Penstemon -- |t CHAPTER 10 Comparison of Linked versus Unlinked Character Models for Species Tree Inference -- |t PART III Beyond the Species Tree -- |t Introduction -- |t CHAPTER 11 The Unfinished Synthesis of Comparative Genomics and Phylogenetics: Examples from Flightless Birds -- |t CHAPTER 12 Phylogenetic Analysis under Heterogeneity and Discordance -- |t CHAPTER 13 The Multispecies Coalescent in Space and Time -- |t CHAPTER 14 Tree Set Visualization, Exploration, and Applications -- |t Bibliography -- |t Index |
506 | 0 | |a restricted access |u http://purl.org/coar/access_right/c_16ec |f online access with authorization |2 star | |
520 | |a An up-to-date reference book on phylogenetic methods and applications for evolutionary biologistsThe increasingly widespread availability of genomic data is transforming how biologists estimate evolutionary relationships among organisms and broadening the range of questions that researchers can test in a phylogenetic framework. Species Tree Inference brings together many of today’s leading scholars in the field to provide an incisive guide to the latest practices for analyzing multilocus sequence data.This wide-ranging and authoritative book gives detailed explanations of emerging new approaches and assesses their strengths and challenges, offering an invaluable context for gauging which procedure to apply given the types of genomic data and processes that contribute to differences in the patterns of inheritance across loci. It demonstrates how to apply these approaches using empirical studies that span a range of taxa, timeframes of diversification, and processes that cause the evolutionary history of genes across genomes to differ.By fully embracing this genomic heterogeneity, Species Tree Inference illustrates how to address questions beyond the goal of estimating phylogenetic relationships of organisms, enabling students and researchers to pursue their own research in statistically sophisticated ways while charting new directions of scientific discovery. | ||
538 | |a Mode of access: Internet via World Wide Web. | ||
546 | |a In English. | ||
588 | 0 | |a Description based on online resource; title from PDF title page (publisher's Web site, viewed 29. Mai 2023) | |
650 | 0 | |a Biology |v Classification. | |
650 | 0 | |a Phylogeny. | |
650 | 7 | |a SCIENCE / Life Sciences / Evolution. |2 bisacsh | |
653 | |a Accuracy and precision. | ||
653 | |a Addition. | ||
653 | |a Akaike information criterion. | ||
653 | |a Algebraic geometry. | ||
653 | |a Algorithm. | ||
653 | |a Allele. | ||
653 | |a Ammunition. | ||
653 | |a Amplicon. | ||
653 | |a Analysis. | ||
653 | |a Approximation. | ||
653 | |a Bayesian inference. | ||
653 | |a Biological process. | ||
653 | |a CPU time. | ||
653 | |a Chromosome. | ||
653 | |a Coalescent theory. | ||
653 | |a Common descent. | ||
653 | |a Computation. | ||
653 | |a Computational phylogenetics. | ||
653 | |a Conditional expectation. | ||
653 | |a Conditional probability distribution. | ||
653 | |a Confidence interval. | ||
653 | |a Consideration. | ||
653 | |a Data set. | ||
653 | |a Detection. | ||
653 | |a Determinant. | ||
653 | |a East Asia. | ||
653 | |a Effective population size. | ||
653 | |a Empiricism. | ||
653 | |a Error term. | ||
653 | |a Error. | ||
653 | |a Estimation. | ||
653 | |a Evolution. | ||
653 | |a F1 hybrid. | ||
653 | |a Gene duplication. | ||
653 | |a Gene flow. | ||
653 | |a Gene. | ||
653 | |a Genre. | ||
653 | |a Graphics processing unit. | ||
653 | |a Horizontal gene transfer. | ||
653 | |a Hybrid (biology). | ||
653 | |a Identifiability. | ||
653 | |a Implementation. | ||
653 | |a Inference. | ||
653 | |a Introgression. | ||
653 | |a Likelihood function. | ||
653 | |a Linear regression. | ||
653 | |a Lycopersicon. | ||
653 | |a Markov chain Monte Carlo. | ||
653 | |a Molecular evolution. | ||
653 | |a Molecular marker. | ||
653 | |a Monocotyledon. | ||
653 | |a Monte Carlo method. | ||
653 | |a NP-hardness. | ||
653 | |a Narration. | ||
653 | |a Network topology. | ||
653 | |a Normal distribution. | ||
653 | |a Nucleic acid sequence. | ||
653 | |a Nucleic acid structure. | ||
653 | |a Nucleotide. | ||
653 | |a Null hypothesis. | ||
653 | |a Order of magnitude. | ||
653 | |a Outgroup (cladistics). | ||
653 | |a Parameter (computer programming). | ||
653 | |a Parameter. | ||
653 | |a Phylogenetic network. | ||
653 | |a Phylogenetic tree. | ||
653 | |a Phylogenetics. | ||
653 | |a Phylogenomics. | ||
653 | |a Polyploid. | ||
653 | |a Posterior probability. | ||
653 | |a Prediction. | ||
653 | |a Probability distribution. | ||
653 | |a Probability. | ||
653 | |a Pseudolikelihood. | ||
653 | |a Quantity. | ||
653 | |a Rational number. | ||
653 | |a Requirement. | ||
653 | |a Result. | ||
653 | |a Reticulation (single-access key). | ||
653 | |a Sample Size. | ||
653 | |a Scalability. | ||
653 | |a Selection bias. | ||
653 | |a Sequence alignment. | ||
653 | |a Shading. | ||
653 | |a Singular value decomposition. | ||
653 | |a Solanum. | ||
653 | |a Speciation (genetic algorithm). | ||
653 | |a Speciation. | ||
653 | |a Species. | ||
653 | |a Statistical model. | ||
653 | |a Statistical significance. | ||
653 | |a Statistics. | ||
653 | |a Subset. | ||
653 | |a Substitution model. | ||
653 | |a Suggestion. | ||
653 | |a Tax. | ||
653 | |a Taxon. | ||
653 | |a Test statistic. | ||
653 | |a Trade-off. | ||
653 | |a Uncertainty. | ||
700 | 1 | |a Blischak, Paul D., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Brown, Jeremy M., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Cao, Zhen, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Cloutier, Alison, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Cobb, Kerry, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a DiGiacomo, Alexandria A., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Eaton, Deren A. R., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Edwards, Scott V., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Gallivan, Kyle A., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Gates, Daniel J., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Grayson, Phil, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Knowles, L. Lacey, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Knowles, L. Lacey, |e editor. |4 edt |4 http://id.loc.gov/vocabulary/relators/edt | |
700 | 1 | |a Kubatko, Laura S., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Kubatko, Laura, |e editor. |4 edt |4 http://id.loc.gov/vocabulary/relators/edt | |
700 | 1 | |a Liu, Xinhao, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a McKenzie, Patrick F., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Mirarab, Siavash, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Molloy, Erin, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Mount, Genevieve G., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Nakhleh, Luay, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Oaks, Jamie R., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Ogilvie, Huw A., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Pease, James B., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Pilson, Diana, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Sackton, Timothy B., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Smith, Stacey D., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Smith, Stephen A., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Solís-Lemus, Claudia, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Swofford, David L., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Thompson, Coleen E., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Waight, Emiko M., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Walker, Joseph F., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Warnow, Tandy, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Weinheimer, Ellen I., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Wilgenbusch, James C., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Wolfe, Andrea D., |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
700 | 1 | |a Yan, Zhi, |e contributor. |4 ctb |4 https://id.loc.gov/vocabulary/relators/ctb | |
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773 | 0 | 8 | |i Title is part of eBook package: |d De Gruyter |t EBOOK PACKAGE Medicine and Life Sciences 2023 English |z 9783111319216 |
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773 | 0 | 8 | |i Title is part of eBook package: |d De Gruyter |t Princeton University Press Complete eBook-Package 2023 |z 9783110749748 |
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