Data and Text Processing for Health and Life Sciences.
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Superior document: | Advances in Experimental Medicine and Biology Series ; v.1137 |
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Place / Publishing House: | Cham : : Springer International Publishing AG,, 2019. Ã2019. |
Year of Publication: | 2019 |
Edition: | 1st ed. |
Language: | English |
Series: | Advances in Experimental Medicine and Biology Series
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Online Access: | |
Physical Description: | 1 online resource (107 pages) |
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Couto, Francisco M. Data and Text Processing for Health and Life Sciences. 1st ed. Cham : Springer International Publishing AG, 2019. Ã2019. 1 online resource (107 pages) text txt rdacontent computer c rdamedia online resource cr rdacarrier Advances in Experimental Medicine and Biology Series ; v.1137 Intro -- Preface -- Acknowledgments -- Contents -- Acronyms -- 1 Introduction -- Biomedical Data Repositories -- Scientific Text -- Amount of Text -- Ambiguity and Contextualization -- Biomedical Ontologies -- Programming Skills -- Why This Book? -- Third-Party Solutions -- Simple Pipelines -- How This Book Helps Health and Life Specialists? -- Shell Scripting -- Text Files -- Relational Databases -- What Is in the Book? -- Command Line Tools -- Pipelines -- Regular Expressions -- Semantics -- 2 Resources -- Biomedical Text -- What? -- Where? -- How? -- Semantics -- What? -- Languages -- Formality -- Gold Related Documents -- Where? -- OBO Ontologies -- Popular Controlled Vocabularies -- How? -- OWL -- URI -- Further Reading -- 3 Data Retrieval -- Caffeine Example -- Unix Shell -- Current Directory -- Windows Directories -- Change Directory -- Useful Key Combinations -- Shell Version -- Data File -- File Contents -- Reverse File Contents -- My First Script -- Line Breaks -- Redirection Operator -- Installing Tools -- Permissions -- Debug -- Save Output -- Web Identifiers -- Single and Double Quotes -- Comments -- Data Retrieval -- Standard Error Output -- Data Extraction -- Single and Multiple Patterns -- Data Elements Selection -- Task Repetition -- Assembly Line -- File Header -- Variable -- XML Processing -- Human Proteins -- PubMed Identifiers -- PubMed Identifiers Extraction -- Duplicate Removal -- Complex Elements -- XPath -- Namespace Problems -- Only Local Names -- Queries -- Extracting XPath Results -- Text Retrieval -- Publication URL -- Title and Abstract -- Disease Recognition -- Further Reading -- 4 Text Processing -- Pattern Matching -- Case Insensitive Matching -- Number of Matches -- Invert Match -- File Differences -- Evaluation Metrics -- Word Matching -- Regular Expressions -- Extended Syntax -- Alternation -- Basic Syntax. Scope -- Multiple Alternatives -- Multiple Characters -- Spaces -- Groups -- Ranges -- Negation -- Quantifiers -- Optional -- Multiple and Optional -- Multiple and Compulsory -- All Options -- Position -- Beginning -- Ending -- Near the End -- Word in Between -- Full Line -- Match Position -- Tokenization -- Character Delimiters -- Wrong Tokens -- String Replacement -- Multi-character Delimiters -- Keep Delimiters -- Sentences File -- Entity Recognition -- Select the Sentence -- Pattern File -- Relation Extraction -- Multiple Filters -- Relation Type -- Remove Relation Types -- Further Reading -- 5 Semantic Processing -- Classes -- OWL Files -- Class Label -- Class Definition -- Related Classes -- URIs and Labels -- URI of a Label -- Label of a URI -- Synonyms -- URI of Synonyms -- Parent Classes -- Labels of Parents -- Related Classes -- Labels of Related Classes -- Ancestors -- Grandparents -- Root Class -- Recursion -- Iteration -- My Lexicon -- Ancestors Labels -- Merging Labels -- Ancestors Matched -- Generic Lexicon -- All Labels -- Problematic Entries -- Special Characters Frequency -- Completeness -- Removing Special Characters -- Removing Extra Terms -- Removing Extra Spaces -- Disease Recognition -- Performance -- Inverted Recognition -- Case Insensitive -- ASCII Encoding -- Correct Matches -- Incorrect Matches -- Entity Linking -- Modified Labels -- Ambiguity -- Surrounding Entities -- Semantic Similarity -- Measures -- DiShIn Installation -- Database File -- DiShIn Execution -- Large Lexicons -- MER Installation -- Lexicon Files -- MER Execution -- Further Reading -- Bibliography -- Index. Description based on publisher supplied metadata and other sources. Electronic reproduction. Ann Arbor, Michigan : ProQuest Ebook Central, 2024. Available via World Wide Web. Access may be limited to ProQuest Ebook Central affiliated libraries. Electronic books. Print version: Couto, Francisco M. Data and Text Processing for Health and Life Sciences Cham : Springer International Publishing AG,c2019 9783030138448 ProQuest (Firm) Advances in Experimental Medicine and Biology Series https://ebookcentral.proquest.com/lib/oeawat/detail.action?docID=5788423 Click to View |
language |
English |
format |
eBook |
author |
Couto, Francisco M. |
spellingShingle |
Couto, Francisco M. Data and Text Processing for Health and Life Sciences. Advances in Experimental Medicine and Biology Series ; Intro -- Preface -- Acknowledgments -- Contents -- Acronyms -- 1 Introduction -- Biomedical Data Repositories -- Scientific Text -- Amount of Text -- Ambiguity and Contextualization -- Biomedical Ontologies -- Programming Skills -- Why This Book? -- Third-Party Solutions -- Simple Pipelines -- How This Book Helps Health and Life Specialists? -- Shell Scripting -- Text Files -- Relational Databases -- What Is in the Book? -- Command Line Tools -- Pipelines -- Regular Expressions -- Semantics -- 2 Resources -- Biomedical Text -- What? -- Where? -- How? -- Semantics -- What? -- Languages -- Formality -- Gold Related Documents -- Where? -- OBO Ontologies -- Popular Controlled Vocabularies -- How? -- OWL -- URI -- Further Reading -- 3 Data Retrieval -- Caffeine Example -- Unix Shell -- Current Directory -- Windows Directories -- Change Directory -- Useful Key Combinations -- Shell Version -- Data File -- File Contents -- Reverse File Contents -- My First Script -- Line Breaks -- Redirection Operator -- Installing Tools -- Permissions -- Debug -- Save Output -- Web Identifiers -- Single and Double Quotes -- Comments -- Data Retrieval -- Standard Error Output -- Data Extraction -- Single and Multiple Patterns -- Data Elements Selection -- Task Repetition -- Assembly Line -- File Header -- Variable -- XML Processing -- Human Proteins -- PubMed Identifiers -- PubMed Identifiers Extraction -- Duplicate Removal -- Complex Elements -- XPath -- Namespace Problems -- Only Local Names -- Queries -- Extracting XPath Results -- Text Retrieval -- Publication URL -- Title and Abstract -- Disease Recognition -- Further Reading -- 4 Text Processing -- Pattern Matching -- Case Insensitive Matching -- Number of Matches -- Invert Match -- File Differences -- Evaluation Metrics -- Word Matching -- Regular Expressions -- Extended Syntax -- Alternation -- Basic Syntax. Scope -- Multiple Alternatives -- Multiple Characters -- Spaces -- Groups -- Ranges -- Negation -- Quantifiers -- Optional -- Multiple and Optional -- Multiple and Compulsory -- All Options -- Position -- Beginning -- Ending -- Near the End -- Word in Between -- Full Line -- Match Position -- Tokenization -- Character Delimiters -- Wrong Tokens -- String Replacement -- Multi-character Delimiters -- Keep Delimiters -- Sentences File -- Entity Recognition -- Select the Sentence -- Pattern File -- Relation Extraction -- Multiple Filters -- Relation Type -- Remove Relation Types -- Further Reading -- 5 Semantic Processing -- Classes -- OWL Files -- Class Label -- Class Definition -- Related Classes -- URIs and Labels -- URI of a Label -- Label of a URI -- Synonyms -- URI of Synonyms -- Parent Classes -- Labels of Parents -- Related Classes -- Labels of Related Classes -- Ancestors -- Grandparents -- Root Class -- Recursion -- Iteration -- My Lexicon -- Ancestors Labels -- Merging Labels -- Ancestors Matched -- Generic Lexicon -- All Labels -- Problematic Entries -- Special Characters Frequency -- Completeness -- Removing Special Characters -- Removing Extra Terms -- Removing Extra Spaces -- Disease Recognition -- Performance -- Inverted Recognition -- Case Insensitive -- ASCII Encoding -- Correct Matches -- Incorrect Matches -- Entity Linking -- Modified Labels -- Ambiguity -- Surrounding Entities -- Semantic Similarity -- Measures -- DiShIn Installation -- Database File -- DiShIn Execution -- Large Lexicons -- MER Installation -- Lexicon Files -- MER Execution -- Further Reading -- Bibliography -- Index. |
author_facet |
Couto, Francisco M. |
author_variant |
f m c fm fmc |
author_sort |
Couto, Francisco M. |
title |
Data and Text Processing for Health and Life Sciences. |
title_full |
Data and Text Processing for Health and Life Sciences. |
title_fullStr |
Data and Text Processing for Health and Life Sciences. |
title_full_unstemmed |
Data and Text Processing for Health and Life Sciences. |
title_auth |
Data and Text Processing for Health and Life Sciences. |
title_new |
Data and Text Processing for Health and Life Sciences. |
title_sort |
data and text processing for health and life sciences. |
series |
Advances in Experimental Medicine and Biology Series ; |
series2 |
Advances in Experimental Medicine and Biology Series ; |
publisher |
Springer International Publishing AG, |
publishDate |
2019 |
physical |
1 online resource (107 pages) |
edition |
1st ed. |
contents |
Intro -- Preface -- Acknowledgments -- Contents -- Acronyms -- 1 Introduction -- Biomedical Data Repositories -- Scientific Text -- Amount of Text -- Ambiguity and Contextualization -- Biomedical Ontologies -- Programming Skills -- Why This Book? -- Third-Party Solutions -- Simple Pipelines -- How This Book Helps Health and Life Specialists? -- Shell Scripting -- Text Files -- Relational Databases -- What Is in the Book? -- Command Line Tools -- Pipelines -- Regular Expressions -- Semantics -- 2 Resources -- Biomedical Text -- What? -- Where? -- How? -- Semantics -- What? -- Languages -- Formality -- Gold Related Documents -- Where? -- OBO Ontologies -- Popular Controlled Vocabularies -- How? -- OWL -- URI -- Further Reading -- 3 Data Retrieval -- Caffeine Example -- Unix Shell -- Current Directory -- Windows Directories -- Change Directory -- Useful Key Combinations -- Shell Version -- Data File -- File Contents -- Reverse File Contents -- My First Script -- Line Breaks -- Redirection Operator -- Installing Tools -- Permissions -- Debug -- Save Output -- Web Identifiers -- Single and Double Quotes -- Comments -- Data Retrieval -- Standard Error Output -- Data Extraction -- Single and Multiple Patterns -- Data Elements Selection -- Task Repetition -- Assembly Line -- File Header -- Variable -- XML Processing -- Human Proteins -- PubMed Identifiers -- PubMed Identifiers Extraction -- Duplicate Removal -- Complex Elements -- XPath -- Namespace Problems -- Only Local Names -- Queries -- Extracting XPath Results -- Text Retrieval -- Publication URL -- Title and Abstract -- Disease Recognition -- Further Reading -- 4 Text Processing -- Pattern Matching -- Case Insensitive Matching -- Number of Matches -- Invert Match -- File Differences -- Evaluation Metrics -- Word Matching -- Regular Expressions -- Extended Syntax -- Alternation -- Basic Syntax. Scope -- Multiple Alternatives -- Multiple Characters -- Spaces -- Groups -- Ranges -- Negation -- Quantifiers -- Optional -- Multiple and Optional -- Multiple and Compulsory -- All Options -- Position -- Beginning -- Ending -- Near the End -- Word in Between -- Full Line -- Match Position -- Tokenization -- Character Delimiters -- Wrong Tokens -- String Replacement -- Multi-character Delimiters -- Keep Delimiters -- Sentences File -- Entity Recognition -- Select the Sentence -- Pattern File -- Relation Extraction -- Multiple Filters -- Relation Type -- Remove Relation Types -- Further Reading -- 5 Semantic Processing -- Classes -- OWL Files -- Class Label -- Class Definition -- Related Classes -- URIs and Labels -- URI of a Label -- Label of a URI -- Synonyms -- URI of Synonyms -- Parent Classes -- Labels of Parents -- Related Classes -- Labels of Related Classes -- Ancestors -- Grandparents -- Root Class -- Recursion -- Iteration -- My Lexicon -- Ancestors Labels -- Merging Labels -- Ancestors Matched -- Generic Lexicon -- All Labels -- Problematic Entries -- Special Characters Frequency -- Completeness -- Removing Special Characters -- Removing Extra Terms -- Removing Extra Spaces -- Disease Recognition -- Performance -- Inverted Recognition -- Case Insensitive -- ASCII Encoding -- Correct Matches -- Incorrect Matches -- Entity Linking -- Modified Labels -- Ambiguity -- Surrounding Entities -- Semantic Similarity -- Measures -- DiShIn Installation -- Database File -- DiShIn Execution -- Large Lexicons -- MER Installation -- Lexicon Files -- MER Execution -- Further Reading -- Bibliography -- Index. |
isbn |
9783030138455 9783030138448 |
callnumber-first |
R - Medicine |
callnumber-subject |
RC - Internal Medicine |
callnumber-label |
RC261-271 |
callnumber-sort |
RC 3261 3271 |
genre |
Electronic books. |
genre_facet |
Electronic books. |
url |
https://ebookcentral.proquest.com/lib/oeawat/detail.action?docID=5788423 |
illustrated |
Not Illustrated |
oclc_num |
1106161463 |
work_keys_str_mv |
AT coutofranciscom dataandtextprocessingforhealthandlifesciences |
status_str |
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ids_txt_mv |
(MiAaPQ)5005788423 (Au-PeEL)EBL5788423 (OCoLC)1106161463 |
carrierType_str_mv |
cr |
hierarchy_parent_title |
Advances in Experimental Medicine and Biology Series ; v.1137 |
is_hierarchy_title |
Data and Text Processing for Health and Life Sciences. |
container_title |
Advances in Experimental Medicine and Biology Series ; v.1137 |
marc_error |
Info : Unimarc and ISO-8859-1 translations identical, choosing ISO-8859-1. --- [ 856 : z ] |
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