YearTitleJournalAuthors
2024Pairtools: From sequencing data to chromosome contacts.PLoS Comput BiolAbdennur, N., Fudenberg, G., Flyamer, IM (...) Imakaev, M., Venev, SV.
2024Making sense of Timothy syndrome with 3D human neuronal models.NeuronNajm, R., Knoblich, JA.
2024Red2Flpe-SCON: a versatile, multicolor strategy for generating mosaic conditional knockout mice.Nat CommunWu, SS., Kim, S., Lee, H (...) Colozza, G., Koo, BK.
2024Label-Free Sample Preparation for Single-Cell Proteomics.Methods Mol BiolHartlmayr, D., Ctortecka, C., Mayer, R., Mechtler, K., Seth, A.
2024In vivo CRISPR screens reveal SCAF1 and USP15 as drivers of pancreatic cancer.Nat CommunMartinez, S., Wu, S., Geuenich, M (...) Elling, U., Schramek, D.
2024Splice_sim: a nucleotide conversion-enabled RNA-seq simulation and evaluation framework.Genome BiolPopitsch, N., Neumann, T., von Haeseler, A., Ameres, SL.
2024Apelin regulates skeletal muscle adaptation to exercise in a high-intensity interval training model.Am J Physiol Cell PhysiolKilpiö, T., Skarp, S., Perjés, Á (...) Magga, J., Kerkelä, R.
2024ARID1B controls transcriptional programs of axon projection in an organoid model of the human corpus callosum.Cell Stem CellMartins-Costa, C., Wiegers, A., Pham, VA (...) Corsini, NS., Knoblich, JA.
2023A conserved fertilization complex of Izumo1, Spaca6, and Tmem81 mediates sperm-egg interaction in vertebratesbioRxivDeneke, VE., Blaha, A., Lu, Y (...) Ikawa, M., Pauli, A.
2023SLAMseq resolves the kinetics of maternal and zygotic gene expression during early zebrafish embryogenesis.Cell RepBhat, P., Cabrera-Quio, LE., Herzog, VA (...) Pauli, A., Ameres, SL.
2023Blood Vessel Organoids for Development and Disease.Circ ResSalewskij, K., Penninger, JM.
2023An ethical framework for human embryology with embryo models.CellRivron, NC., Martinez Arias, A., Pera, MF., Moris, N., M'hamdi, HI.
2023Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell-like Program Conserved in HPV-Positive Cancers.Cancer DiscovLeiendecker, L., Neumann, T., Jung, PS (...) Wiesner, T., Obenauf, AC.
2023MS Ana: Improving Sensitivity in Peptide Identification with Spectral Library Search.J Proteome ResDorl, S., Winkler, S., Mechtler, K., Dorfer, V.
2023StarMap: a user-friendly workflow for Rosetta-driven molecular structure refinement.Nat ProtocLugmayr, W., Kotov, V., Goessweiner-Mohr, N (...) DiMaio, F., Marlovits, TC.
2023Protocol for capturing trophectoderm stem cells reflecting the blastocyst stage.STAR ProtocSeong, J., Rivron, NC.
2023Electric field stimulation boosts neuronal differentiation of neural stem cells for spinal cord injury treatment via PI3K/Akt/GSK-3β/β-catenin activation.Cell BiosciLiu, Q., Telezhkin, V., Jiang, W (...) Penninger, J., Song, B.
2023A de novo transcription-dependent TAD boundary underpins critical multiway interactions during antibody class switch recombination.Mol CellCostea, J., Schoeberl, UE., Malzl, D (...) Goloborodko, A., Pavri, R.
2023A molecular network of conserved factors keeps ribosomes dormant in the egg.NatureLeesch, F., Lorenzo-Orts, L., Pribitzer, C (...) Haselbach, D., Pauli, A.
2023ZFP462 safeguards neural lineage specification by targeting G9A/GLP-mediated heterochromatin to silence enhancers.Nat Cell BiolYelagandula, R., Stecher, K., Novatchkova, M (...) Brennecke, J., Bell, O.